library(haemdata)
use_pinboard("devel")
all_mice <- get_pin("mmu_mrna_all_mice_GENCODEm28_HLT_qc.rds")AML datasets
Note: Validation mice also available via Haemdata/Ondrive. See X for more details.
First, we need to setup the pin-board and download the mouse datasets.
pca$biplotpca$pairs_plotpca$correlation_plotmetadata_mmu |>
plot_cohort_survival("AML.mRNA.2016")pca$biplotpca$pairs_plotpca$correlation_plotmetadata_mmu |>
plot_cohort_survival("AML.mRNA.2018")pca$biplotpca$pairs_plotpca$correlation_plotmetadata_mmu |>
plot_cohort_survival("AML.mRNA.2020")pca$biplotpca$pairs_plotpca$correlation_plotFirst, we need to setup the pin-board from which well retrieve the human datasets
library(haemdata)
use_pinboard("devel")City of Hope Biobank FLT3 patients
Include some background info on these samples, IRB etc
library(haemdata)
use_pinboard("devel")
se <- get_pin("hsa_mrna_flt3_GENCODEr40_qc.rds")
pca <- pca_se(se, col_by = "patient_id")pca$biplotpca$pairs_plotpca$correlation_plot